Fields (SnpSift 5.2 API)

java.lang.Object

org.snpsift.annotate.mem.Fields

All Implemented Interfaces:: Serializable, Iterable<org.snpeff.vcf.VcfHeaderInfo>

public class Fields extends Object implements Iterable<org.snpeff.vcf.VcfHeaderInfo>, Serializable

See Also:

Constructor Summary

Constructors

Constructor

Description

Fields()
Method Summary

Modifier and Type

Method

Description

void

add(org.snpeff.vcf.VcfHeaderInfo field)

org.snpeff.vcf.VcfHeaderInfo

get(String name)

String[]

getNames()

Iterator<org.snpeff.vcf.VcfHeaderInfo>

iterator()

static Fields

load(String fileName)

void

save(String fileName)

Save to file

Collection<org.snpeff.vcf.VcfHeaderEntry>

vcfHeaders(String prefix)

Get VCF headers

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable
forEach, spliterator

Constructor Details
- Fields
  
  public Fields()
Method Details
- load
  
  public static Fields load(String fileName)
- add
  
  public void add(org.snpeff.vcf.VcfHeaderInfo field)
- get
  
  public org.snpeff.vcf.VcfHeaderInfo get(String name)
- getNames
  
  public String[] getNames()
- iterator
  
  public Iterator<org.snpeff.vcf.VcfHeaderInfo> iterator()
  
  Specified by:
  
  iterator in interface Iterable<org.snpeff.vcf.VcfHeaderInfo>
- save
  
  public void save(String fileName)
  
  Save to file
- vcfHeaders
  
  public Collection<org.snpeff.vcf.VcfHeaderEntry> vcfHeaders(String prefix)
  
  Get VCF headers